3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02132

Details:

PFam ID : PF02132

PFam Domain Description : RecR protein

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 1035

Average sequence length: 40.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02132	A9GQA8_SORC5_70_115	5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02132	B0VGB5_CLOAI_38_78	100

Sequence based PCA Plot of the family - PF02132 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=17
Motif2 Start=1 Length=8
Motif3 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay