3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01257

Details:

PFam ID : PF01257

PFam Domain Description : Respiratory-chain NADH dehydrogenase 24 Kd subunit

Number of Sequence in 50% Dataset : 189

Number of Sequence in Full Dataset : 1679

Average sequence length: 126.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01257	C4IFS0_CLOBU_1_42	93.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01257	B2ULY9_AKKM8_37_191	100

Sequence based PCA Plot of the family - PF01257 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=63 Length=11
Motif3 Start=50 Length=11
Motif4 Start=122 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay