3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08620

Details:

PFam ID : PF08620

PFam Domain Description : RPAP1-like, C-terminal

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 116

Average sequence length: 73.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08620	B7PHG7_IXOSC_94_128	63.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08620	E1Z8V3_9CHLO_300_383	100

Sequence based PCA Plot of the family - PF08620 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=17
Motif2 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay