3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11131

Details:

PFam ID : PF11131

PFam Domain Description : Rap-phr extracellular signalling

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 9

Average sequence length: 33.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11131	B2VB11_ERWT9_32_287	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11131	E3DVA5_BACA1_3_39	100

Sequence based PCA Plot of the family - PF11131 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay