3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00542

Details:

PFam ID : PF00542

PFam Domain Description : Ribosomal protein L7/L12 C-terminal domain

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 1115

Average sequence length: 66.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00542	C6BEE1_RALP1_102_172	46.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00542	E8W7M8_STRFA_16_83	98.8

Sequence based PCA Plot of the family - PF00542 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=25 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay