3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01885

Details:

PFam ID : PF01885

PFam Domain Description : RNA 2'-phosphotransferase, Tpt1 / KptA family

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 396

Average sequence length: 174.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01885	C0PD89_MAIZE_37_152	70.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01885	B8C3I3_THAPS_51_297	100

Sequence based PCA Plot of the family - PF01885 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=75 Length=8
Motif3 Start=21 Length=8
Motif4 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay