3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01201

Details:

PFam ID : PF01201

PFam Domain Description : Ribosomal protein S8e

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 429

Average sequence length: 180.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01201	B0X2X3_CULQU_44_117	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01201	C4MAX2_ENTHI_1_187	99.5

Sequence based PCA Plot of the family - PF01201 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay