3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02646

Details:

PFam ID : PF02646

PFam Domain Description : RmuC family

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 699

Average sequence length: 296.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02646	E1NT12_9LACO_1_36	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02646	D0CJB2_9SYNE_1_195	100

Sequence based PCA Plot of the family - PF02646 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=97 Length=8
Motif3 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay