3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12647

Details:

PFam ID : PF12647

PFam Domain Description : RNHCP domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 68

Average sequence length: 86.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12647	C5BZZ5_BEUC1_12_102	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12647	C5BZZ5_BEUC1_12_102	100

Sequence based PCA Plot of the family - PF12647 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=29 Length=23
Motif2 Start=5 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay