3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01351

Details:

PFam ID : PF01351

PFam Domain Description : Ribonuclease HII

Number of Sequence in 50% Dataset : 151

Number of Sequence in Full Dataset : 1684

Average sequence length: 181.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01351	F2CIY4_STRSA_84_162	84

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01351	A9V104_MONBE_302_547	100

Sequence based PCA Plot of the family - PF01351 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=96 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay