3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11464

Details:

PFam ID : PF11464

PFam Domain Description : Rabenosyn Rab binding domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 32

Average sequence length: 39.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11464	F1VP84_MORCA_45_244	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11464	Q9N3Y4_CAEEL_519_558	90.3

Sequence based PCA Plot of the family - PF11464 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay