3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08292

Details:

PFam ID : PF08292

PFam Domain Description : RNA polymerase III subunit Rpc25

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 151

Average sequence length: 113.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08292	C6TJ76_SOYBN_79_138	86.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08292	D7FSQ2_ECTSI_96_278	100

Sequence based PCA Plot of the family - PF08292 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=66 Length=8
Motif2 Start=1 Length=18
Motif3 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay