3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07711

Details:

PFam ID : PF07711

PFam Domain Description : Rab geranylgeranyl transferase alpha-subunit, insert domain

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 14

Average sequence length: 89.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07711	E3T8Y8_9SAUR_1_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07711	PGTA_RAT_243_346	100

Sequence based PCA Plot of the family - PF07711 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay