3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09273

Details:

PFam ID : PF09273

PFam Domain Description : Rubisco LSMT substrate-binding

Number of Sequence in 50% Dataset : 150

Number of Sequence in Full Dataset : 310

Average sequence length: 122.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09273	Q014Y8_OSTTA_731_828	73.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09273	A8IJM8_CHLRE_360_540	100

Sequence based PCA Plot of the family - PF09273 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=18
Motif3 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay