3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06992

Details:

PFam ID : PF06992

PFam Domain Description : Replication protein P

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 77

Average sequence length: 182.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06992	A4P1J2_HAEIF_2_137	82.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06992	A7MGK9_ENTS8_3_239	97.3

Sequence based PCA Plot of the family - PF06992 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=49 Length=8
Motif3 Start=195 Length=8
Motif4 Start=104 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay