3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05025

Details:

PFam ID : PF05025

PFam Domain Description : RbsD / FucU transport protein family

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 487

Average sequence length: 134.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05025	E9RRU2_9FIRM_48_186	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05025	E0HYN2_9BACT_1_147	100

Sequence based PCA Plot of the family - PF05025 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=128 Length=20
Motif3 Start=15 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay