3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02145

Details:

PFam ID : PF02145

PFam Domain Description : Rap/ran-GAP

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 303

Average sequence length: 180.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02145	E9CA44_9EUKA_1674_1743	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02145	C4M0V0_ENTHI_312_558	100

Sequence based PCA Plot of the family - PF02145 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=149 Length=8
Motif3 Start=7 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay