3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00827

Details:

PFam ID : PF00827

PFam Domain Description : Ribosomal L15

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 226

Average sequence length: 169.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00827	A2YC64_ORYSI_309_361	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00827	B6SWX0_MAIZE_2_50	92.8

Sequence based PCA Plot of the family - PF00827 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=13 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay