3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00410

Details:

PFam ID : PF00410

PFam Domain Description : Ribosomal protein S8

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 1318

Average sequence length: 126.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00410	C5L6Y5_9ALVE_2_65	72.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00410	C0F8P9_9RICK_5_63	100

Sequence based PCA Plot of the family - PF00410 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=17
Motif2 Start=1 Length=8
Motif3 Start=55 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay