3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04437

Details:

PFam ID : PF04437

PFam Domain Description : RINT-1 / TIP-1 family

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 150

Average sequence length: 393.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04437	Q75B58_ASHGO_205_672	85.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04437	C3YJD7_BRAFL_471_709	100

Sequence based PCA Plot of the family - PF04437 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=408 Length=8
Motif3 Start=501 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay