3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08206

Details:

PFam ID : PF08206

PFam Domain Description : Ribonuclease B OB domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 1028

Average sequence length: 58.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08206	Q1Q6K5_9BACT_70_136	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08206	Q1Q6K5_9BACT_70_136	100

Sequence based PCA Plot of the family - PF08206 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=52 Length=8
Motif3 Start=8 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay