3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05000

Details:

PFam ID : PF05000

PFam Domain Description : RNA polymerase Rpb1, domain 4

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 1627

Average sequence length: 95.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05000	A6NYC6_9BACE_615_714	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05000	RPB1_IIV6_793_920	99.9

Sequence based PCA Plot of the family - PF05000 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=85 Length=8
Motif4 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay