3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08534

Details:

PFam ID : PF08534

PFam Domain Description : Redoxin

Number of Sequence in 50% Dataset : 475

Number of Sequence in Full Dataset : 2856

Average sequence length: 141.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08534	A1ZKF4_9BACT_14_111	87.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08534	A7N3P8_VIBHB_8_157	91.3

Sequence based PCA Plot of the family - PF08534 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=122 Length=8
Motif3 Start=105 Length=11
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay