3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08600

Details:

PFam ID : PF08600

PFam Domain Description : Rsm1-like

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 74

Average sequence length: 88.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08600	B3RV20_TRIAD_155_273	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08600	E7DZJ8_BLUGR_270_369	100

Sequence based PCA Plot of the family - PF08600 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=17
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay