3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00016

Details:

PFam ID : PF00016

PFam Domain Description : Ribulose bisphosphate carboxylase large chain, catalytic domain

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 1318

Average sequence length: 202.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00016	Q95CZ7_9FLOR_149_456	56

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00016	Q32449_9FLOR_202_299	99.9

Sequence based PCA Plot of the family - PF00016 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=300 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay