3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07498

Details:

PFam ID : PF07498

PFam Domain Description : Rho termination factor, N-terminal domain

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 976

Average sequence length: 40.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07498	B9GU04_POPTR_1194_1227	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07498	D1CBT1_THET1_232_274	90.2

Sequence based PCA Plot of the family - PF07498 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=17
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay