3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01030

Details:

PFam ID : PF01030

PFam Domain Description : Receptor L domain

Number of Sequence in 50% Dataset : 262

Number of Sequence in Full Dataset : 730

Average sequence length: 110.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01030	B6VPZ6_ONCMY_1_68	57.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01030	Q6SAS3_DROME_338_413	100

Sequence based PCA Plot of the family - PF01030 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=43 Length=8
Motif2 Start=29 Length=8
Motif3 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay