3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09414

Details:

PFam ID : PF09414

PFam Domain Description : RNA ligase

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 205

Average sequence length: 179.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09414	E1KIE5_9FIRM_80_254	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09414	C7LRX6_DESBD_39_226	100

Sequence based PCA Plot of the family - PF09414 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=136 Length=8
Motif2 Start=103 Length=8
Motif3 Start=217 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay