3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00424

Details:

PFam ID : PF00424

PFam Domain Description : REV protein (anti-repression trans-activator protein)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 1809

Average sequence length: 95.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00424	B5TRK4_9PARA_1_115	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00424	Q699U7_SIVCZ_1_83	98.8

Sequence based PCA Plot of the family - PF00424 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=8
Motif2 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay