3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04098

Details:

PFam ID : PF04098

PFam Domain Description : Rad52/22 family double-strand break repair protein

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 178

Average sequence length: 134.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04098	A5E4C0_LODEL_70_242	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04098	Q2IFG3_ANADE_5_155	100

Sequence based PCA Plot of the family - PF04098 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=113 Length=18
Motif3 Start=40 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay