3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01632

Details:

PFam ID : PF01632

PFam Domain Description : Ribosomal protein L35

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 893

Average sequence length: 60.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01632	Q4RX86_TETNG_3_63	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01632	C4Q6I8_SCHMA_76_132	100

Sequence based PCA Plot of the family - PF01632 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=28 Length=8
Motif2 Start=3 Length=24

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay