3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08423

Details:

PFam ID : PF08423

PFam Domain Description : Rad51

Number of Sequence in 50% Dataset : 174

Number of Sequence in Full Dataset : 751

Average sequence length: 198.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08423	C1DKU5_AZOVD_1_29	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08423	A5YSG0_9EURY_147_254	99.4

Sequence based PCA Plot of the family - PF08423 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=25 Length=8
Motif3 Start=291 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay