3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00554

Details:

PFam ID : PF00554

PFam Domain Description : Rel homology domain (RHD)

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 162

Average sequence length: 149.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00554	Q9NDR4_SARPE_8_195	65.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00554	A7S787_NEMVE_519_675	100

Sequence based PCA Plot of the family - PF00554 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=8
Motif2 Start=30 Length=8
Motif3 Start=12 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay