3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01280

Details:

PFam ID : PF01280

PFam Domain Description : Ribosomal protein L19e

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 218

Average sequence length: 136.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01280	E1K2V5_9EURY_1_45	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01280	Q3LVV0_BIGNA_1_150	100

Sequence based PCA Plot of the family - PF01280 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=22
Motif2 Start=71 Length=8
Motif3 Start=126 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay