3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06624

Details:

PFam ID : PF06624

PFam Domain Description : Ribosome associated membrane protein RAMP4

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 113

Average sequence length: 59.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06624	D8M7T8_BLAHO_18_76	44.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06624	Q4DR30_TRYCR_3_70	96.4

Sequence based PCA Plot of the family - PF06624 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay