3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14184

Details:

PFam ID : PF14184

PFam Domain Description : Regulatory protein YrvL

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 36

Average sequence length: 116.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14184	C3IGU5_BACTU_1_58	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14184	C9YKY9_CLODR_12_147	100

Sequence based PCA Plot of the family - PF14184 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay