3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04712

Details:

PFam ID : PF04712

PFam Domain Description : Radial spokehead-like protein

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 166

Average sequence length: 284.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04712	Q8IIV6_PLAF7_7_643	90.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04712	A4H732_LEIBR_433_576	100

Sequence based PCA Plot of the family - PF04712 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=236 Length=8
Motif2 Start=132 Length=8
Motif3 Start=407 Length=8
Motif4 Start=426 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay