3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13540

Details:

PFam ID : PF13540

PFam Domain Description : Regulator of chromosome condensation (RCC1) repeat

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 1969

Average sequence length: 29.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13540	A2SQA4_METLZ_1_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13540	D2VXR2_NAEGR_278_307	100

Sequence based PCA Plot of the family - PF13540 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=8
Motif2 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay