3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08646

Details:

PFam ID : PF08646

PFam Domain Description : Replication factor-A C terminal domain

Number of Sequence in 50% Dataset : 135

Number of Sequence in Full Dataset : 358

Average sequence length: 134.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08646	E9IJZ7_SOLIN_17_96	97.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08646	F1KWX5_ASCSU_445_612	100

Sequence based PCA Plot of the family - PF08646 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay