3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11479

Details:

PFam ID : PF11479

PFam Domain Description : RNA silencing suppressor P21

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 3

Average sequence length: 118

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11479	E4MFJ5_9BACT_133_293	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11479	Q65898_9CLOS_1_177	100

Sequence based PCA Plot of the family - PF11479 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay