3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08524

Details:

PFam ID : PF08524

PFam Domain Description : rRNA processing

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 107

Average sequence length: 121.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08524	A7SBI1_NEMVE_23_195	86.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08524	C4XZ85_CLAL4_2_94	99.0

Sequence based PCA Plot of the family - PF08524 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=160 Length=8
Motif4 Start=149 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay