3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00562

Details:

PFam ID : PF00562

PFam Domain Description : RNA polymerase Rpb2, domain 6

Number of Sequence in 50% Dataset : 123

Number of Sequence in Full Dataset : 2152

Average sequence length: 352.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00562	D2J6W7_9STAP_786_906	55.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00562	C6LQK7_GIAIB_681_1140	99.8

Sequence based PCA Plot of the family - PF00562 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=181 Length=38
Motif2 Start=40 Length=73

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay