3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03089

Details:

PFam ID : PF03089

PFam Domain Description : Recombination activating protein 2

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 350

Average sequence length: 258.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03089	A0C917_PARTE_374_486	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03089	B2WZ38_9PASS_170_251	98.8

Sequence based PCA Plot of the family - PF03089 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=11
Motif2 Start=69 Length=19
Motif3 Start=103 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay