3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00276

Details:

PFam ID : PF00276

PFam Domain Description : Ribosomal protein L23

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 1429

Average sequence length: 88.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00276	F1NK84_CHICK_35_93	62.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00276	D9IXP7_9ALVE_12_102	100

Sequence based PCA Plot of the family - PF00276 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=31 Length=17
Motif2 Start=1 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay