3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00680

Details:

PFam ID : PF00680

PFam Domain Description : RNA dependent RNA polymerase

Number of Sequence in 50% Dataset : 209

Number of Sequence in Full Dataset : 1502

Average sequence length: 210.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00680	B1NEV0_9VIRU_582_751	75.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00680	Q8BCE7_9PICO_1_87	97.1

Sequence based PCA Plot of the family - PF00680 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=24 Length=11
Motif4 Start=220 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay