3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14200

Details:

PFam ID : PF14200

PFam Domain Description : Ricin-type beta-trefoil lectin domain-like

Number of Sequence in 50% Dataset : 333

Number of Sequence in Full Dataset : 872

Average sequence length: 99.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14200	A5Z4H3_9FIRM_1_397	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14200	D7C0J2_STRBB_313_429	99.5

Sequence based PCA Plot of the family - PF14200 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=61 Length=8
Motif3 Start=52 Length=8
Motif4 Start=131 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay