3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13656

Details:

PFam ID : PF13656

PFam Domain Description : RNA polymerase Rpb3/Rpb11 dimerisation domain

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 280

Average sequence length: 75.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13656	F1L850_ASCSU_26_70	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13656	C6LTI0_GIAIB_30_114	100

Sequence based PCA Plot of the family - PF13656 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=27 Length=18
Motif2 Start=9 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay