3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00638

Details:

PFam ID : PF00638

PFam Domain Description : RanBP1 domain

Number of Sequence in 50% Dataset : 109

Number of Sequence in Full Dataset : 520

Average sequence length: 114.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00638	E4Y5A1_OIKDI_1_60	78.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00638	A7F6S3_SCLS1_448_529	100

Sequence based PCA Plot of the family - PF00638 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=117 Length=8
Motif2 Start=2 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay