3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06881

Details:

PFam ID : PF06881

PFam Domain Description : RNA polymerase II transcription factor SIII (Elongin) subunit A

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 122

Average sequence length: 106.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06881	A2DAU0_TRIVA_1_98	34

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06881	Q6BYH0_DEBHA_35_165	100

Sequence based PCA Plot of the family - PF06881 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=43 Length=11
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay