3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14409

Details:

PFam ID : PF14409

PFam Domain Description : Ribosomally synthesized peptide in Herpetosiphon

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 9

Average sequence length: 51.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14409	A9B7U0_HERA2_1_52	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14409	A9B7U0_HERA2_1_52	62

Sequence based PCA Plot of the family - PF14409 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay